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Services tagged with "sequence"

results 1 to 10 of 14

 
  • TfscanService  

    by vt.edu
    United States
    Wraps the tfscan transcription factor binding site prediction program from the EMBOSS suite. The TRANSFAC Database is a database of eukaryotic cis-ac... (community description)
    Tags:
    • protein,
    • sequence,
    • matching,
    • suite,
    • trans-acting factor,
    • eukaryotic,
    • university,
    • wrapping,
    • element,
    • cis-acting,
    • insect,
    • EMBOSS,
    • plant,
    • list,
    • regulatory,
    • taxonomic group,
    • human,
    • organism,
    • binding site,
    • bioinformatics,
    • transcription factor,
    • free,
    • prediction,
    • EMBOSS suite,
    • TRANSFAC,
    • yeast,
    • tfscan,
    • fungi,
    • DNA,
    • vertebrates,
    • database
  • GlimmermService  

    by vt.edu
    United States
    Wraps the GlimmerM program, from The Institute for Genomic Research (TIGR), for doing gene prediction for eukaryotic genomic DNA sequences. see: http:... (community description)
    Tags:
    • gene model,
    • bioinformatics,
    • splice site,
    • university,
    • sequence,
    • exon,
    • prediction,
    • genome,
    • gene,
    • DNA,
    • eukaryotic
  • EMBLNucleotideSequen...  

    by webservicex.net
    United States
    The EMBL Nucleotide Sequence Database constitutes Europe's primary nucleotide sequence resource.This webservice currently provides access to over 16.8 million records, consisting of 19.6 billion nucle... (provider description)
    Tags:
    • elegan,
    • human,
    • nucleotide,
    • fruit fly,
    • EMBL,
    • sequence,
    • company,
    • record,
    • genome,
    • _free
  • EMBLNucleotideSequen...  

    by webservicex.com
    United States
    The EMBL Nucleotide Sequence Database constitutes Europe's primary nucleotide sequence resource.This webservice currently provides access to over 16.8 million records, consisting of 19.6 billion nucle... (provider description)
    Tags:
    • company,
    • nucleotide,
    • fruit fly,
    • record,
    • elegan,
    • human,
    • sequence,
    • genome,
    • database,
    • EMBL
  • WaterService  

    by vt.edu
    United States
    Wraps the water local alignment program from the EMBOSS suite. Water uses the Smith-Waterman algorithm (modified for speed enhancements), a dynamic p... (community description)
    Tags:
    • bioninformatics,
    • bioinformatics,
    • sequence,
    • free,
    • alignment,
    • water,
    • Smith-Waterman algorithm,
    • EMBOSS suite,
    • university,
    • local,
    • calculation,
    • EMGBOSS suite,
    • modified
  • GenscanService  

    by vt.edu
    United States
    Wraps the GENSCAN program for doing gene prediction. It analyzes genomic DNA sequences from a variety of organisms including humans and other vertebr... (community description)
    Tags:
    • structure,
    • human,
    • probabilistic model,
    • DNA,
    • GENSCAN,
    • gene,
    • TATA box,
    • bioinformatics,
    • region,
    • free,
    • vertebrate,
    • analysis,
    • restricted,
    • invertebrate,
    • organism,
    • size,
    • exon,
    • prediction,
    • university,
    • splice site,
    • DAS/1,
    • plant,
    • density,
    • sequence,
    • property,
    • model parameter,
    • genome
  • MummerpatricService  

    by vt.edu
    United States
    Wraps the MUMmer 3.0 program developed by The Institute for Genomic Research (TIGR) for doing large sequence comparisons. The database contains annot... (community description)
    Tags:
    • sequence comparison,
    • free,
    • bioinformatics,
    • reverse complement,
    • annotation,
    • organism,
    • complement,
    • comparison,
    • protein,
    • patric project,
    • sequence,
    • match,
    • wrapping ,
    • database,
    • reverse,
    • university,
    • alignment,
    • identification,
    • mismatch,
    • suffix-tree,
    • subsequence,
    • DNA,
    • genome
  • WatergtService  

    by vt.edu
    United States
    Wraps the water local alignment program from the EMBOSS suite. Water uses the Smith-Waterman algorithm (modified for speed enhancements), a dynamic p... (community description)
    Tags:
    • local,
    • university,
    • alignment,
    • bioinformatics,
    • EMBOSS suite,
    • free,
    • sequence
  • roseImplementationSe...  

    by uni-bielefeld.de
    Germany
    Rose implements a new probabilistic model of the evolution of RNA-, DNA-, or protein-like sequences. (community description)
    Tags:
    • university,
    • sequence,
    • RNA,
    • DNA,
    • protein,
    • bioinformatics,
    • free,
    • hobit
  • reputerImplementatio...  

    by uni-bielefeld.de
    Germany
    REPuter computes all maximal duplications and reverse, complemented and reverse complemented repeats in a DNA input sequence. (community description)
    Tags:
    • sequence,
    • university,
    • hobit,
    • visualization,
    • free,
    • chromosome,
    • DNA,
    • genome,
    • bioinformatics,
    • duplicate
 
 
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  2. protein
  3. gene
  4. ontology
  5. seqlogo

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